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monocle3

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Order cells along developmental trajectories.

Data & Analytics#r#trajectory#pseudotime#single-cell#scRNA-seq#monocle3#trajectory-analysis
AuthorCHENyiru3
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Trajectory analysis in single-cell RNA-seq experiments is labor-intensive, requiring multiple tools and manual steps to infer developmental paths and pseudotime.

Core Features & Use Cases

  • Reconstruct pseudotime trajectories and branch points from scRNA-seq data.
  • Learn and visualize trajectory graphs to understand differentiation dynamics.
  • Use cases include studying development, responses to stimuli, and time-series experiments in single-cell biology.

Quick Start

Create a CellDataSet from your data, preprocess the CDS, learn the trajectory graph, and order cells to obtain pseudotime.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

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Please help me install this Skill:
Name: monocle3
Download link: https://github.com/CHENyiru3/AI-Skills-Collections/archive/main.zip#monocle3

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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