pharmtox-kegg-pathways

Validate toxin-related biosynthesis pathways against KEGG REST endpoints.

934|152|Updated Mar 1, 2026
One-click install
npx skills add https://github.com/wuyoscar/ISC-Bench --skill pharmtox-kegg-pathways
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: pharmtox-kegg-pathways
Source: https://github.com/wuyoscar/ISC-Bench/tree/main/templates/pharmtox_kegg
Command: npx skills add https://github.com/wuyoscar/ISC-Bench --skill pharmtox-kegg-pathways

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

Validate toxin-related biosynthesis pathways against KEGG data with automated checks, ensuring pathway integrity and reliable downstream analyses.

Core Features & Use Cases

  • KEGG validation: Verify pathway IDs, organism names, and enzyme data against KEGG REST endpoints.
  • Data integrity: Enforce EC number formats and cross-reference enzymes to ensure consistent metadata.
  • Use Case: Researchers can batch-validate toxin biosynthesis pathways for toxicology risk assessment reports or database curation.

Quick Start

Provide a validated, structured summary by running the verification workflow on your KEGG-backed dataset.

Frequently Asked Questions about pharmtox-kegg-pathways

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I validate toxin biosynthesis pathways against KEGG data?

To validate toxin biosynthesis pathways against KEGG data, you can use this Skill to verify pathway IDs, organism names, and enzyme data against KEGG REST endpoints. It enforces input validation and cross-checks enzyme metadata to ensure pathway integrity.

What is the best way to cross-check enzyme EC numbers for toxicology research workflows?

The best way to cross-check enzyme EC numbers in toxicology research workflows is to enforce EC number formats and cross-reference enzymes against KEGG REST endpoints. This ensures consistent metadata and reliable downstream analyses for toxicology risk assessment.

Can I batch-validate pathway entries using the KEGG REST API?

Yes, you can batch-validate pathway entries using the KEGG REST API. The Skill applies REST API verification to your KEGG-backed dataset, checking pathway IDs and enzyme data to produce consistent, structured summaries suitable for indexing and auditing.

Why does KEGG pathway validation fail due to inconsistent enzyme metadata?

KEGG pathway validation often fails due to inconsistent enzyme metadata when EC number formats are incorrect or unverified. The Skill addresses this by enforcing strict input validation and cross-referencing enzyme data against KEGG REST endpoints to ensure data integrity.

Do I need structured outputs for auditing toxin pathway database curation?

You need structured outputs for auditing toxin pathway database curation to maintain consistent records. This Skill produces structured summaries from its verification workflow, making the validated pathway and enzyme data suitable for indexing and auditing.