scanorama
CommunityFast, accurate single-cell data integration.
AuthorCHENyiru3
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Scanorama helps integrate multiple single-cell datasets by aligning shared cell types across batches and performing batch correction while preserving biological variation.
Core Features & Use Cases
- Efficient batch correction for diverse scRNA-seq datasets.
- Handles partial overlap of cell types and large-scale integrations.
- Works with Scanpy/AnnData workflows and produces a combined, analysis-ready object.
Quick Start
Install scanorama and run a basic integration pipeline on your AnnData objects to obtain a combined, batch-corrected dataset.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: scanorama Download link: https://github.com/CHENyiru3/AI-Skills-Collections/archive/main.zip#scanorama Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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