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scientific-ebi-databases

Search and retrieve records across EBI databases via unified API wrappers.

3|1|Updated Feb 11, 2026
Search Tags:#search#bioinformatics#databases#ena#metabolights#ebi#dbfetch
One-click install
npx skills add https://github.com/nahisaho/satori --skill scientific-ebi-databases
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: scientific-ebi-databases
Source: https://github.com/nahisaho/satori/tree/main/src/.github/skills/scientific-ebi-databases
Command: npx skills add https://github.com/nahisaho/satori --skill scientific-ebi-databases

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

Consolidates access to the European Bioinformatics Institute (EBI) databases, enabling cross-database searches and streamlined retrieval of entries across EBI Search, ENA, BioStudies, dbfetch, and MetaboLights.

Core Features & Use Cases

  • Cross-database search via EBI Search across multiple databases.
  • ENA Browser-based sequence data retrieval.
  • Access BioStudies project metadata and study records.
  • dbfetch entry retrieval for batch or individual IDs.
  • MetaboLights study discovery and retrieval for metabolomics data.

Quick Start

Search for a set of related entries across EBI databases using EBI Search, then fetch detailed records from ENA, BioStudies, and MetaboLights as needed.

Frequently Asked Questions about scientific-ebi-databases

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I search across multiple EBI databases at once?▼

You can search across multiple EBI databases at once using the unified EBI Search functionality. It aggregates cross-database data discovery, returning related entries from various European Bioinformatics Institute resources in a single query.

What is the best way to retrieve sequence data from ENA?▼

The best way to retrieve sequence data from ENA is by using the ENA Browser wrapper. It speeds up sequence data retrieval by fetching detailed records directly from the European Nucleotide Archive with minimal overhead.

Can I fetch batch entries from dbfetch using EBI database IDs?▼

Yes, you can fetch batch entries from dbfetch using EBI database IDs. The Skill provides dbfetch entry retrieval capabilities to access multiple records efficiently using individual or batch identifiers.

How do I access metabolomics study data from MetaboLights?▼

You access metabolomics study data from MetaboLights by using the MetaboLights study retrieval wrapper. It enables discovery and retrieval of metabolomics study records directly from the EBI database.

Does unified EBI search work with BioStudies project metadata?▼

Yes, unified EBI search works with BioStudies project metadata. The Skill includes a BioStudies wrapper to look up and retrieve project metadata and study records across EBI resources.

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