scientific-metabolic-flux
CommunityInfer metabolic flux from isotope tracing data.
Data & Analytics#fba#metabolic-network#flux-estimation#metabolic-flux#stable-isotope#emu-modeling#mid-data
Authornahisaho
Version1.0.0
Installs0
System Documentation
What problem does it solve?
An analytical framework to estimate metabolic flux from 13C/15N stable-isotope tracer data using EMU modeling and FBA integration, enabling quantitative pathway flux insights from MID data.
Core Features & Use Cases
- EMU-based flux modeling and MID fitting for 13C/15N tracer experiments.
- Natural abundance correction and MID normalization to produce reliable inputs.
- Least-squares flux estimation with EMU network simulation and export of results to CSV.
- BiGG Models integration for reference metabolic models and contextual interpretation.
Quick Start
Run the metabolic flux pipeline on your MID data to estimate fluxes using the EMU framework.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
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Please help me install this Skill: Name: scientific-metabolic-flux Download link: https://github.com/nahisaho/satori/archive/main.zip#scientific-metabolic-flux Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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