sdrf:review
OfficialSDRF review: publish-ready metadata.
Authorbigbio
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Assists researchers and annotators by guiding a thorough SDRF quality review, merging context loading, template detection, and cross-references to publications and PRIDE submissions to ensure metadata accuracy and consistency.
Core Features & Use Cases
- Load SDRF content and detect templates to prepare context for validation.
- Retrieve project and publication context when a PXD accession is available, or read GitHub PR diffs for submission reviews.
- Run the full validation workflow (sdrf-validate), cross-reference with publications and PRIDE data, and generate a comprehensive quality score with actionable discrepancies and recommendations.
Quick Start
Load an SDRF file, run the sdrf-validate workflow, and review cross-references to the associated PRIDE publication.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: sdrf:review Download link: https://github.com/bigbio/sdrf-skills/archive/main.zip#sdrf-review Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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