signac
CommunityIntegrate ATAC with Seurat chromatin insights.
AuthorCHENyiru3
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Signac enables scalable chromatin accessibility analysis and seamless integration with Seurat to unify ATAC and RNA workflows in a single framework.
Core Features & Use Cases
- Chromatin accessibility analysis with Signac, integration with Seurat, and gene activity inference.
- Multi-modal workflows combining ATAC with RNA data for joint visualization and interpretation.
- Best practices for setting up Signac objects, TF-IDF normalization, dimensionality reduction, and visualization.
Quick Start
Install Signac and Seurat, load libraries, and begin analyzing a scATAC-seq dataset by creating a Seurat object with a chromatin assay and computing gene activity.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: signac Download link: https://github.com/CHENyiru3/AI-Skills-Collections/archive/main.zip#signac Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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