stangene
CommunityAutomate gene identifier harmonization in single-cell data.
Authorchansigit
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill streamlines the process of mapping diverse gene identifiers into a standardized set, enabling accurate cross-dataset comparisons.
Core Features & Use Cases
- Gene Name Standardization: Harmonize gene symbols and IDs across various annotation sources for datasets like single-cell sequencing.
- Reference Integration: Automatically build and load authoritative gene annotation databases such as HGNC and Ensembl.
- Use Case: A researcher receives multiple scRNA-seq datasets with inconsistent gene annotations and needs uniform gene identifiers for analysis. This Skill performs a comprehensive mapping cascade to achieve standardization.
Quick Start
Invoke the stangene skill to harmonize gene identifiers in your dataset stored as 'dataset.h5ad' by specifying the species and output directory.
Dependency Matrix
Required Modules
pandasanndatapyarrow
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: stangene Download link: https://github.com/chansigit/stangene/archive/main.zip#stangene Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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