svg-spatialde
CommunityReveal SVGs with SpatialDE in spatial data.
Authorchenyhvvvv
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Spatially resolved gene expression data often contain genes whose expression patterns vary across tissue space; SVGs reveal spatial organization and tissue architecture.
Core Features & Use Cases
- Tests each gene for spatial patterns using Gaussian process regression with SpatialDE.
- Returns per-gene statistics including p-values, FDR q-values, and spatial length scales.
- Useful for tissue discovery, annotation, and comparison across neighboring slices in multi-slice experiments.
Quick Start
Run SpatialDE on your spatial transcriptomics dataset to identify SVGs and view per-gene results in adata.uns/spatialde_results.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: svg-spatialde Download link: https://github.com/chenyhvvvv/STAT-agent/archive/main.zip#svg-spatialde Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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