tooluniverse-expression-data-retrieval

Retrieve gene expression datasets by searching ArrayExpress (E-MTAB, E-GEOD) and BioStudies (S-BSST) workflows, which compile structured dataset profiles containing metadata, sample information, and direct download links.

Gene disambiguation resolves official gene identifiers and aliases before querying public repositories, ensuring precise multi-omics data retrieval and accurate dataset profiling across different species.

Yes, you can fetch RNA-seq data for Homo sapiens across species. The retrieval process generates dataset profiles with top results, quality indicators, and links to both raw and processed data files.

A structured dataset profile includes experiment metadata, sample information, quality assessment indicators, and download links, enforcing consistent reporting to enable reliable data reuse from public repositories.

Use data profiling workflows to search BioStudies (S-BSST) for multi-omics studies, which surfaces relevant datasets, gathers metadata, and guides subsequent multi-omics data integration.

Quality assessment reports provide quality indicators for retrieved gene expression experiments, enforcing disambiguation and consistent reporting to ensure reliable data reuse from public repositories.