vdjdb-duplicates
OfficialAudit VDJdb duplicates & consistency across TCR records
Authorantigenomics
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill identifies and classifies duplicate TCR records in the VDJdb database, ensuring data consistency and accuracy.
Core Features & Use Cases
- Duplicate Detection: Identifies and categorizes duplicate TCRs across various resolution levels and publication sources.
- Author Overlap Check: Evaluates author overlap between publications sharing many TCR sequences.
- High-Frequency Record Detection: Flags potentially spurious high-frequency records.
- Multi-MHC Epitope Report: Reports epitopes presented by multiple distinct MHC molecules or with inconsistent allele resolution.
- Use Case: Imagine you have a VDJdb database with multiple TCR sequences. Use this Skill to identify and resolve duplicate records, ensuring the integrity of your data.
Quick Start
Run the skill by executing /vdjdb-duplicates from the repository root.
Dependency Matrix
Required Modules
pandasnumpyscipy
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: vdjdb-duplicates Download link: https://github.com/antigenomics/vdjdb-db/archive/main.zip#vdjdb-duplicates Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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