AntigenOmics
Official@antigenomics · Russian Federation
Omics of antigens and antigen receptor repertoires. Home of the VDJdb database and immunogenetics software developed by ISALGO lab.
Agent Skills by AntigenOmics
Showing 7 vetted skills indexed across 2 GitHub repositories.
antigenomicsarda
Annotate TCR/BCR sequences using IgBLAST and MMseqs2 reference databases.
antigenomicsvdjdb-proofread
Validate VDJdb chunk files for quality control and data consistency.
antigenomicsvdjdb-publish
Create and update GitHub issues for VDJdb data chunks.
antigenomicsvdjdb-harmonize
Normalize antigen.gene and antigen.species fields in VDJdb chunks to canonical naming.
antigenomicsvdjdb-format
Normalize VDJdb TSV chunks to VDJdb and IMGT standards.
antigenomicsvdjdb-extract
Extract TCR:pMHC specificity data into VDJdb-compatible TSV chunks.
antigenomicsvdjdb-duplicates
Identify and classify duplicate TCR records in VDJdb databases using Python.
Frequently Asked Questions About AntigenOmics
FAQPage SchemaWhat specific immunogenetics tasks does AntigenOmics enable?▼
AntigenOmics enables the systematic curation, validation, and normalization of TCR and BCR repertoire data. It facilitates the extraction of antigen-receptor specificity, the enforcement of IMGT standards for TSV datasets, and the annotation of immune receptor sequences using established reference databases like IgBLAST.
Who is the target persona for these immunogenetics resources?▼
The target personas are computational biologists, immunologists, and bioinformatics researchers focused on adaptive immune receptor repertoire analysis. These resources are designed for scientists managing large-scale TCR/BCR datasets who require rigorous data consistency, standardized naming conventions, and reliable deduplication of immune receptor records.
What are the primary dependencies for running these immunogenetics modules?▼
These modules require a local environment configured for bioinformatics processing, specifically including IgBLAST and MMseqs2 for sequence alignment and annotation. Users must also maintain local VDJdb-compatible TSV structures and ensure their input data adheres to the required schema for validation and harmonization processes.