vdjdb-proofread
OfficialAutomate VDJdb chunk proofreading for quality control and data consistency.
Authorantigenomics
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates the proofreading of VDJdb chunk files to ensure quality control, data consistency, and accurate reporting of TCR specificity.
Core Features & Use Cases
- Quality Control: Validates VDJdb chunk files against QC tools in the
py_src/directory. - Data Consistency: Ensures standardized and consistent reporting of V-J junctions and CDR3 sequences.
- Use Case: Before integrating a new TCR sequence into the VDJdb, use this Skill to verify the quality of the data and identify any discrepancies.
Quick Start
Run the proofread skill on the VDJdb chunk file located at 'chunks/PMID_123456.tsv'.
Dependency Matrix
Required Modules
pandas ChunkQC
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: vdjdb-proofread Download link: https://github.com/antigenomics/vdjdb-db/archive/main.zip#vdjdb-proofread Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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