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vdjdb-extract

Official

Automate TCR:pMHC specificity data extraction and prepare VDJdb-formatted TSV chunks.

Data & Analytics#data extraction#bioinformatics#sequence analysis#VDJdb#TCR:pMHC
Authorantigenomics
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill automates the extraction of TCR:pMHC specificity data from various source files and prepares VDJdb-formatted TSV chunks for further processing.

Core Features & Use Cases

  • Data Extraction: Extracts TCR:pMHC specificity records from source files like papers, PDFs, XLS, and more.
  • VDJdb Format: Produces VDJdb-formatted TSV chunks ready for formatting and proofreading.
  • Use Case: Imagine you have a collection of research papers with TCR:pMHC data. Use this Skill to automatically extract the data and format it into a standardized VDJdb-compatible format.

Quick Start

Run the /extract command with the path to your source files, e.g., /extract /path/to/source/directory.

Dependency Matrix

Required Modules

pandasopenpyxlre

Components

scriptsreferences

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: vdjdb-extract
Download link: https://github.com/antigenomics/vdjdb-db/archive/main.zip#vdjdb-extract

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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