vdjdb-harmonize
OfficialAutomate VDJdb antigen gene and species harmonization.
Authorantigenomics
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates the harmonization of antigen.gene and antigen.species fields in VDJdb chunks, ensuring consistency and accuracy in TCR specificity reporting.
Core Features & Use Cases
- Harmonization: Normalize gene and species names to the VDJdb canonical vocabulary.
- Spurious Detection: Detects and resolves inconsistencies and spurious values.
- Use Case: Harmonize a VDJdb chunk by running the
/harmonizecommand with the path to the chunk file.
Quick Start
Harmonize a VDJdb chunk by running /harmonize path/to/chunk.tsv.
Dependency Matrix
Required Modules
None requiredComponents
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: vdjdb-harmonize Download link: https://github.com/antigenomics/vdjdb-db/archive/main.zip#vdjdb-harmonize Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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