Create and update GitHub issues for VDJdb data chunks.
npx skills add https://github.com/antigenomics/vdjdb-db --skill vdjdb-publish
Please help me install this Agent Skill. Skill: vdjdb-publish Source: https://github.com/antigenomics/vdjdb-db/tree/main/skills/vdjdb-publish Command: npx skills add https://github.com/antigenomics/vdjdb-db --skill vdjdb-publish
Manages the publication of VDJdb data chunks by creating or updating GitHub issues with each chunk, streamlining the process of data submission and integration.
Run the /vdjdb-publish command from the root of the repository to process new or modified chunks in the 'chunks/' directory.
High-intent search queries and answers about installing and using this skill.
You can automate publishing VDJdb data chunks to GitHub issues by running the vdjdb-publish command from the repository root. It processes new or modified files in the 'chunks/' directory, handles file naming conventions, and interacts with the GitHub API to create or update issues.
Yes, you need both git and GitHub CLI installed to manage VDJdb data submissions. The automation relies on these dependencies to interact with the GitHub API for creating and updating issues and committing individual data chunks.
Yes, the tool asks for user confirmation before creating new issues or committing changes. This ensures you can review each VDJdb data chunk and verify the extracted PubMed IDs before the integration is finalized.
The best way to track large VDJdb datasets is by automating issue creation for each chunk. This streamlines data submission by maintaining a direct reference between each committed chunk and its corresponding GitHub issue.
PubMed ID extraction works by parsing file naming conventions within the VDJdb chunks directory. The tool processes these identifiers automatically during the automated creation or updating of GitHub issues.
VDJdb chunk publication requires the chunks directory because the command specifically targets new or modified files located within that folder to process, commit, and generate corresponding GitHub issues.
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shogo-labsAggregate GitHub pull requests, issues, and CI status onto a canvas dashboard.
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