wes-clinical-report-en

What problem does it solve?

This Skill automatically generates English-language clinical reports from WES data, eliminating manual reporting work.

Core Features & Use Cases

• Professional Reporting: Converts WES markdown reports into structured, formatted clinical PDF reports with clinical interpretations and follow-up recommendations.
• Clinical Interpretation: Incorporates pathogenic variant identification, pharmacogenomics analysis, and rare damaging variant prioritization.
• Customizable Layout: Supports configurable institutional logos on covers and headers. Adaptable for Novogene or custom WES data.

Quick Start

To generate a WES clinical report for all samples in 'Reports/' and save it in 'PDF-EN/', use:

python skills/wes-clinical-report-en/wes_clinical_report_en.py --report-dir /path/to/Reports/ --output-dir /path/to/PDF-EN/