wes-clinical-report-en

Automate WES clinical report generation by running a Python script that converts markdown reports into formatted English clinical PDFs, processing all samples in a specified directory and outputting them to a target folder.

A pharmacogenomics clinical report for whole exome sequencing includes pathogenic variant identification, pharmacogenomics analysis, rare damaging variant prioritization, clinical interpretations, and follow-up recommendations.

Yes, you need pandas and reportlab installed, as they are required dependencies for data manipulation and structured PDF generation when converting WES markdown files into clinical reports.

Yes, the layout is customizable and supports configurable institutional logos on both the report cover and headers to adapt the WES clinical PDF output for specific organizations.

Yes, the clinical report generation tool is adaptable and explicitly supports processing WES markdown data from Novogene or custom sources to produce professional English PDF reports.

The best way to convert multiple WES markdown reports is using the command line interface, where you specify the input report directory and output folder to batch process all samples automatically.