wes-clinical-report-es

Generate Spanish clinical PDF reports from Whole Exome Sequencing data.

Updated May 10, 2026

Search Tags:#bioinformatics #pharmacogenomics #Spanish #clinical report #WES

Ready to run

npx skills add https://github.com/MubasherMohammed/opencode-BioInfo --skill wes-clinical-report-es

💬 Prompt for ChatGPT / Claude Chat▼

Please help me install this Agent Skill.
Skill: wes-clinical-report-es
Source: https://github.com/MubasherMohammed/opencode-BioInfo/tree/main/python/skills/wes-clinical-report-es
Command: npx skills add https://github.com/MubasherMohammed/opencode-BioInfo --skill wes-clinical-report-es

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires reportlab, pandas, and includes scripts (resource) and references (resource) components.

What problem does it solve?

This Skill automates the generation of professional Spanish clinical PDF reports from Whole Exome Sequencing (WES) data, including clinical interpretation and pharmacogenomic alerts.

Core Features & Use Cases

Clinical Report Generation: Creates detailed clinical reports in Spanish from WES data.
Pharmacogenomics: Includes pharmacogenomic alerts and follow-up recommendations.
Use Case: Ideal for researchers and clinicians who need to translate and interpret WES data into a clinical context.

Quick Start

Generate a clinical report in Spanish for a WES sample using the command: python wes_clinical_report_es.py --report-dir /path/to/REPORTS/ --output-dir /path/to/PDF-ES/ --samples Sample3

Frequently Asked Questions about wes-clinical-report-es

High-intent search queries and answers about installing and using this skill.

FAQPage Schema

How do I generate a Spanish clinical report from WES data?▼

To generate a Spanish clinical report from WES data, run the Python script by specifying your report directory, output directory, and target sample. It translates English markdown input into a Spanish PDF with clinical interpretation and pharmacogenomic alerts.

Does generating WES clinical reports in Spanish require specific Python libraries?▼

Generating WES clinical reports in Spanish requires Python 3.9 or higher. You must also have the reportlab and pandas libraries installed to process the WES data and format the final PDF output.

What is included in a pharmacogenomics clinical report from whole exome sequencing?▼

A pharmacogenomics clinical report from whole exome sequencing includes translated clinical interpretations of WES data alongside specific pharmacogenomic alerts and follow-up recommendations for clinical workflows.

Can I translate English markdown clinical interpretations into Spanish PDF output?▼

Yes, you can translate English markdown clinical interpretations into Spanish PDF output. The script processes English markdown input from WES data and produces a professional Spanish PDF report.

What's the best way to automate Spanish PDF generation for multiple WES samples?▼

To automate Spanish PDF generation for WES samples, use the command line interface to specify your report and output directories. You can target specific samples like Sample3 for tailored clinical report generation.

Why does my WES clinical report generation fail when parsing markdown input?▼

WES clinical report generation fails when parsing markdown input if your Python environment is below version 3.9 or if the required pandas and reportlab dependencies are missing from your workflow setup.