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anndatar-seurat-scanpy-conversion

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Bridge Seurat and AnnData with seamless interop.

Data & Analytics#python#r#conversion#single-cell#seurat#anndatar#anndatar-r
Authortony-zhelonkin
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Convert between AnnData objects in Python and Seurat objects in R using the modern anndataR API, enabling interoperability for cross-language single-cell workflows.

Core Features & Use Cases

  • Direct Read/Write: Read h5ad into Seurat directly and write Seurat objects back to h5ad.
  • Two-Step Customization: Use a two-step conversion path for customized mappings between assays, embeddings, and metadata.
  • Cross-Platform Interoperability: Facilitate data exchange between Python-based scRNA-seq pipelines and R-based Seurat analyses for multi-step analyses.

Quick Start

Install and load the anndataR package, then perform a basic AnnData ↔ Seurat conversion to bootstrap your workflow.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: anndatar-seurat-scanpy-conversion
Download link: https://github.com/tony-zhelonkin/SciAgent-toolkit/archive/main.zip#anndatar-seurat-scanpy-conversion

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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