Access ENA resources via REST APIs and FTP for automated genomics pipelines.
npx skills add https://github.com/swaruplab/operon --skill ena-database-swaruplab
Please help me install this Agent Skill. Skill: ena-database Source: https://github.com/swaruplab/operon/tree/main/src-tauri/protocols/ena-database Command: npx skills add https://github.com/swaruplab/operon --skill ena-database-swaruplab
Access ENA data via API/FTP to retrieve nucleotide sequences, raw reads, and genome assemblies for genomics workflows, reducing manual search and data wrangling.
Fetch a sample by accession using the ENA Browser API and download its FASTQ files.
High-intent search queries and answers about installing and using this skill.
You can programmatically access ENA data using REST APIs and FTP to retrieve studies, samples, runs, and assemblies by accession for integration into automated genomics workflows, reducing manual data wrangling.
Available ENA endpoints include the Portal, Browser, Taxonomy, and Cross-Reference APIs, which support searching and filtering nucleotide sequence records, genome assemblies, and raw reads.
The ENA REST API outputs metadata and file retrieval results in JSON, XML, or TSV formats, ensuring structured data integration directly into automated bioinformatics pipelines.
Yes, ENA bulk downloads are supported via FTP and Aspera, enabling efficient retrieval of large datasets like raw reads and genome assemblies for automated workflows.
The Skill imposes standard API usage patterns to handle ENA API pagination automatically and provides retry guidance, ensuring reliable automation when fetching large volumes of records.
Use the ENA Browser API to fetch specific records by accession, while the Taxonomy endpoint is suited for searching and filtering records based on taxonomic classifications.
Hung-3008Retrieve nucleotide sequences, reads, and assemblies from ENA via REST and FTP.
sagunkayasthaRetrieve nucleotide sequences, FASTQ reads, and genome assemblies from ENA via REST APIs.
ovachieverRetrieve nucleotide sequences and associated data from ENA via REST APIs.
yf8578Retrieve nucleotide sequences, FASTQ reads, and genome assemblies from ENA via REST APIs and FTP.
