reactome-skill

Fetch Reactome pathway, event, and participant summaries via REST APIs.

Updated Aug 23, 2026
One-click install
npx skills add https://github.com/hanumin/Tumi-DentAI-ResearchNexus --skill reactome-skill
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: reactome-skill
Source: https://github.com/hanumin/Tumi-DentAI-ResearchNexus/tree/main/hermes-skills/reactome
Command: npx skills add https://github.com/hanumin/Tumi-DentAI-ResearchNexus --skill reactome-skill

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes scripts (resource) and references (resource) components.

What problem does it solve?

This Skill enables quick access to detailed Reactome pathway, event, and participant data, simplifying complex bioinformatics queries.

Core Features & Use Cases

  • Pathway and Event Summaries: Retrieve brief descriptions and key details about specific pathways or biological events.
  • Participant and Diagram Data: Access participant lists and diagram-related information for pathways.
  • Use Case: A researcher wants a short summary of the R-HSA-199420 pathway to include in a presentation or report.

Quick Start

Use the reactome skill to fetch a summary of pathway R-HSA-199420.

Frequently Asked Questions about reactome-skill

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I retrieve a Reactome pathway summary for biomedical research?

To retrieve a Reactome pathway summary, you request data from the Reactome ContentService REST API endpoints. This fetches concise pathway descriptions and participant details as JSON data for specific biological pathways.

Can I access participant and event data for specific biological pathways?

Yes, you can access participant lists and event data for biological pathways. The system queries the Reactome ContentService to fetch detailed JSON information about pathway participants and diagram-related components.

What is the best way to get a brief description of a specific Reactome pathway like R-HSA-199420?

The best way to get a brief description of pathway R-HSA-199420 is to call the Reactome ContentService endpoints. This fetches concise pathway summaries on demand, simplifying complex bioinformatics queries for reports or presentations.

Do I need any external dependencies to fetch Reactome pathway data via REST API?

No external dependencies are required to fetch Reactome pathway data. The Skill operates independently using internal scripts and references to query Reactome ContentService REST API endpoints and return JSON data.

Does this tool support retrieving diagram-related information for pathway events?

Yes, retrieving diagram-related information for pathway events is supported. The Skill fetches detailed summaries and data related to Reactome pathways, events, and participants directly via the Reactome ContentService REST APIs.

Are there limitations to the pathway summaries fetched from the Reactome ContentService?

The Skill provides concise Reactome pathway summaries on demand with a basic implementation depth. It is designed for quick access to summaries and participant data rather than performing complex bioinformatics data analysis or custom pathway modeling.