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nahisaho
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scientific-reactome-pathways

Search Reactome pathways and map UniProt accessions via REST API.

3|1|Updated Feb 11, 2026
Search Tags:#bioinformatics#pathways#hierarchy#rest-api#reactome#uniprot
One-click install
npx skills add https://github.com/nahisaho/satori --skill scientific-reactome-pathways
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: scientific-reactome-pathways
Source: https://github.com/nahisaho/satori/tree/main/src/.github/skills/scientific-reactome-pathways
Command: npx skills add https://github.com/nahisaho/satori --skill scientific-reactome-pathways

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

Enables researchers to search Reactome pathways by name or keyword, retrieve pathway hierarchy, and map UniProt accessions to pathways to support integrative bioinformatics workflows.

Core Features & Use Cases

  • Pathway search by name/keyword with detail retrieval.
  • Hierarchy extraction and navigation of Reactome pathways.
  • UniProt mapping for pathway participants and annotations.
  • Pathway diagram data retrieval for visualization and reporting.
  • Use Case: a biologist investigates MAPK signaling by locating the pathway, expanding its hierarchy, and mapping related UniProt entries for downstream experiments.

Quick Start

Query Reactome pathways by keyword to obtain pathway data and UniProt mappings.

Frequently Asked Questions about scientific-reactome-pathways

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I map UniProt accessions to Reactome pathways?▼

You can map UniProt accessions to Reactome pathways by querying pathway names or keywords to retrieve structured data and extract participant annotations for bioinformatics workflows.

How do I extract Reactome pathway hierarchy using a REST API?▼

Extract Reactome pathway hierarchy by querying the REST API to retrieve nested pathway structures, then parse the JSON output to navigate parent and child pathway relationships.

Can I search Reactome pathways by keyword for downstream data integration?▼

Yes, you can search Reactome pathways by name or keyword to obtain pathway details and UniProt mappings, producing structured JSON outputs for bioinformatics pipeline integration.

What is the best way to retrieve pathway diagram data for visualization?▼

Retrieve pathway diagram data for visualization by querying specific Reactome pathway identifiers, extracting hierarchical structures, and parsing the JSON output for reporting.

Do I need external dependencies to parse Reactome REST API JSON outputs?▼

No external dependencies are required to parse Reactome REST API JSON outputs, as the process relies on internal JSON parsing to produce structured data for analysis.

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