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scientific-structural-proteomics

Consolidate structural biology data from PDBe, EMDB, UniProt, Complex Portal, DeepGO, and EVE.

3|1|Updated Feb 11, 2026
Search Tags:#data-integration#proteomics#uniprot#pdbe#structural-biology#eve#deepgo
One-click install
npx skills add https://github.com/nahisaho/satori --skill scientific-structural-proteomics
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: scientific-structural-proteomics
Source: https://github.com/nahisaho/satori/tree/main/src/.github/skills/scientific-structural-proteomics
Command: npx skills add https://github.com/nahisaho/satori --skill scientific-structural-proteomics

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

Integrates multiple structural biology sources into a single workflow to enable comprehensive protein profiling and reduce manual data gathering and inconsistencies.

Core Features & Use Cases

  • Consolidated access to PDBe, EMDB, UniProt, Complex Portal, DeepGO, and EVE for protein analysis.
  • Retrieval of structure summaries, maps, domains/variants, subunits, GO predictions, and variant scores to support end-to-end analyses.
  • Use Case: Researchers can build a complete structural-functional profile of a protein to drive hypothesis generation and reporting.

Quick Start

Query a target protein across PDBe, EMDB, UniProt, Complex Portal, DeepGO, and EVE to generate a unified structural and functional profile.

Frequently Asked Questions about scientific-structural-proteomics

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I integrate structural biology data from UniProt and PDBe for protein profiling?▼

Structural biology data integration combines PDBe, EMDB, UniProt, Complex Portal, DeepGO, and EVE into a single workflow to generate a unified structural-functional profile for proteins.

How do I retrieve protein variant scores and GO predictions across multiple databases?▼

You retrieve protein variant scores and GO predictions by querying a target protein across the integrated DeepGO and EVE sources, consolidating the results into a unified structural-functional profile.

Can I use DeepGO and EVE data with Complex Portal for end-to-end protein analysis?▼

Yes, you can use DeepGO and EVE with Complex Portal because the system integrates all three alongside PDBe, EMDB, and UniProt to enable comprehensive end-to-end protein analysis.

What is the best way to consolidate multi-source structural proteomics data?▼

The best way to consolidate multi-source structural proteomics data is using a unified workflow that integrates PDBe, EMDB, UniProt, Complex Portal, DeepGO, and EVE to reduce manual data gathering and inconsistencies.

What limitations exist when querying structural biology data across PDBe, EMDB, and UniProt?▼

The system is limited to the data provided by PDBe, EMDB, UniProt, Complex Portal, DeepGO, and EVE. It outputs structured results suitable for downstream analytics but does not process data outside these integrated sources.

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