tcga-expression-for-gene
CommunityCross-cancer TCGA gene expression insights.
AuthorMDhewei
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Query TCGA expression data for a single gene across all cancer cohorts and generate comparative visuals.
Core Features & Use Cases
- Pan-cancer overview: Generate a TCGA-wide expression landscape to identify cancers with the highest or lowest gene expression.
- Cohort specifics: Download-and-plot expression distribution for a chosen TCGA cohort.
- Tumor vs Normal: Compare tumor and normal tissue expression within a selected cohort.
- Use in discovery pipelines to prioritize genes for survival or mutation analyses across cancer types.
Quick Start
Run a quick pan-cancer expression analysis for TP53 using the default settings and outdir to store results.
Dependency Matrix
Required Modules
pandasmatplotlibrequests
Components
scripts
💻 Claude Code Installation
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Please help me install this Skill: Name: tcga-expression-for-gene Download link: https://github.com/MDhewei/bioinfor-claw/archive/main.zip#tcga-expression-for-gene Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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