MDheweiCommunity·48 Agent Skills Included

bioinfor-claw

Bioinformatics analysis, CRISPR design, and literature research workflows

Runs 50 bioinformatics workflows covering TCGA, GEO, GTEx, and DepMap data downloads, gene-centered cancer analysis, survival statistics, and protein structure visualization. Designs CRISPR sgRNAs, base and prime editor guides, and analyzes pooled screens without manual scripting. Generates publication-quality plots, pathway enrichment, literature digests, and lab discovery reports from plain-English requests.

64|12

↗

npx skills add MDhewei/bioinfor-claw --all -g -y

All Skills in This Repository (48)

Pure Emerald Level Indicators

📦 In Repo

MDhewei

bioinformatics-plot-generator

Route bioinformatics plot requests to specialized sub-skills for figure generation.

geo-download-data

Fetch GEO datasets and parse series_matrix into expression matrices and metadata.

tcga-download-data

Download TCGA genomic datasets from the GDC Data Portal with streaming and MD5 verification.

gtex-download-data

Download GTEx expression data matrices from the GTEx Portal API or static files.

depmap-download-data

Download selective DepMap datasets from specified releases with caching and manifests.

paper-digest-single

Generate a structured markdown digest from a PubMed ID, DOI, arXiv ID, or local PDF.

pubmed-search

Search PubMed, rank results, and export TSV and markdown reports.

bioinformatics_big_papers_weekly_report

Retrieve recent bioinformatics papers and generate ranked TSV and PDF reports.

preprint-tracker

Query bioRxiv and medRxiv APIs to compile preprint metadata, abstracts, and author lists.

depmap-analysis-for-gene

Analyzes a single gene across DepMap cancer cell lines using multi-module methods including expression, mutation, copy_number, essentiality, coexpression, and coessentiality, producing summaries and plots.

cox-survival-analysis

Analyzes time-to-onset data with Cox proportional-hazards models and generates survival curves and related metrics from RCTs or cohort studies.

coexpression-for-gene

Identify genes co-expressed with a query gene across TCGA and GTEx datasets.

Community

Advanced

Frequently Asked Questions

FAQPage Schema

How to install bioinfor-claw?▼

Run `npx skills add MDhewei/bioinfor-claw --all -g -y` in your terminal to install all 50 skills globally.

What bioinformatics analyses can bioinfor-claw run?▼

It covers TCGA survival and expression analysis, DepMap essentiality, RNA-seq differential expression, methylation, proteomics, single-cell basics, clustering, and publication-quality plotting.

Can bioinfor-claw design CRISPR guides?▼

Yes. It designs knockout sgRNAs, base editor and prime editor guides, builds pooled libraries, and runs MAGeCK screen analysis and QC.

Does bioinfor-claw work with Claude Code and OpenClaw?▼

Yes. Every skill follows the standard SKILL.md format and works in Claude Code, OpenClaw, Cursor, or any agent that scans SKILL.md files.

Can I use bioinfor-claw without coding experience?▼

Yes. Describe your analysis in plain English and the agent picks the right skill, fills in parameters, and returns figures and tables automatically.