Runchuan-BUCommunity·25 Agent Skills Included

BioClaw

Chat-based bioinformatics analysis, plotting, and literature research

Runs BLAST searches, read alignment, single-cell analysis, and differential expression directly from chat messages. Generates publication-quality plots, protein structure renders, and PDF reports without manual command-line work. Queries PubMed, UniProt, PDB, KEGG, and ClinVar, then delivers figures and summaries back to the research group.

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npx skills add Runchuan-BU/BioClaw --all -g -y

Available:

Tells the agent how the system is structured, which bioinformatics tools and skills are available in the container, and how to route chat messages to analysis workflows.

All Skills in This Repository (25)

Pure Emerald Level Indicators

📦 In Repo

Runchuan-BU

query-alphafold

Query the AlphaFold EBI API for UniProt protein structures and retrieve PDB/CIF files and confidence metrics.

query-reactome

Queries Reactome pathways and reactions via ContentService and AnalysisService APIs.

query-clinvar

Query NCBI ClinVar for clinical significance and annotations of genetic variants.

query-opentarget

Queries OpenTargets Platform for drug-target associations and disease-gene evidence via structured GraphQL responses.

sequence-analysis

Analyzes nucleotide and protein sequences for GC content, ORFs, restriction sites, and primers.

query-geo

Search GEO databases for gene expression datasets by keyword, organism, and accession type.

blast-search

Run BLAST searches for DNA, RNA, or protein sequences in BioClaw.

add-voice-transcription

Transcribe WhatsApp voice messages into text for BioClaw agent context.

setup

Install and configure BioClaw runtime components and WhatsApp authentication.

add-telegram

Add Telegram bot support to BioClaw for inbound and outbound message routing.

query-interpro

Query InterPro REST API for protein domain annotations by UniProt ID.

pubmed-search

Search PubMed via NCBI Entrez and BioPython for ranked biomedical literature metadata.

Community

Intermediate

Frequently Asked Questions

FAQPage Schema

How to install BioClaw?▼

Run `npx skills add Runchuan-BU/BioClaw --all -g -y` in your terminal to install all skills in this suite globally.

What can BioClaw do for biology research?▼

It runs BLAST searches, read alignment, single-cell and differential expression analysis, protein structure rendering, and literature searches from plain chat messages, returning plots and reports directly.

Which bioinformatics tools are included?▼

The container ships with BLAST+, SAMtools, BEDTools, BWA, minimap2, FastQC, plus Python libraries like BioPython, scanpy, PyDESeq2, and RDKit.

Can I use BioClaw without coding experience?▼

Yes. You send plain-English requests in WhatsApp or the web chat, and the agent runs the analysis and sends back results, figures, and reports.

Does BioClaw work with messaging apps other than WhatsApp?▼

Yes. Built-in skills add Telegram, Gmail, and a local web chat interface, and you can extend it to other channels.